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Integrated Bioanalytics
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Table of contents
WELCOME
GETTING STARTED
overview
installation
DATA VISUALIZATION
data visualization I
data visualization II
data visualization III
STATISTICAL METHODS
wrangling and summaries
dimensional reduction
flat clustering
hierarchical clustering
comparing means
MODELS
numerical models
embedding models
GC-MS DATA
loading analyzeGCMSdata
using analyzeGCMSdata
CDF export
SEQUENCE ANALYSIS
homology
alignments
phylogenies
phylogenetic analyses
comparative genomics
ANALYTICAL REPORTS
figures & captions
question-driven report
APPENDIX
links
datasets
r faq
templates
View book source
links
geoms
geoms and ggplot2 cheatsheet
colors
ColorBrewer2
question-driven report
datasets
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